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  5. LOC_Os03g60540.1

LOC_Os03g60540.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000107 (SeedPlants) Phylogenetic Tree(s): OG_06_0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60540.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00073930 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
AMTR_s00137p00104280 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT1G27730 ZAT10, STZ salt tolerance zinc finger 0.04 Archaeplastida
AT2G28710 No alias C2H2-type zinc finger family protein 0.04 Archaeplastida
AT3G60580 No alias C2H2-like zinc finger protein 0.09 Archaeplastida
AT5G03510 No alias C2H2-type zinc finger family protein 0.04 Archaeplastida
AT5G43170 AZF3, ZF3 zinc-finger protein 3 0.06 Archaeplastida
AT5G59820 RHL41, ZAT12 C2H2-type zinc finger family protein 0.02 Archaeplastida
Gb_10423 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g62190.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os03g32220.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g60560.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os04g46670.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_10426425g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_109421g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_167434g0010 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
MA_19127g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_5277601g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
MA_6321456g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc04g077980.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc06g060740.3.1 No alias C2H2 zinc finger transcription factor 0.07 Archaeplastida
Solyc06g074800.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc08g078590.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc12g088390.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e001253_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e002063_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e002344_P001 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
Zm00001e003057_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e006181_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e011983_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e028782_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e029605_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e037888_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e038072_P001 No alias C2H2 zinc finger transcription factor 0.06 Archaeplastida
Zm00001e038074_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!