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  5. LOC_Os03g60930.1

LOC_Os03g60930.1


Description : pre-60S ribosomal subunit assembly factor (NOP4)


Gene families : OG0005453 (Archaeplastida) Phylogenetic Tree(s): OG0005453_tree ,
OG_05_0006804 (LandPlants) Phylogenetic Tree(s): OG_05_0006804_tree ,
OG_06_0008625 (SeedPlants) Phylogenetic Tree(s): OG_06_0008625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60930.1
Cluster HCCA: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Gb_24677 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.04 Archaeplastida
MA_10433709g0020 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida
MA_10436192g0010 No alias No annotation 0.02 Archaeplastida
Smo419047 No alias No description available 0.04 Archaeplastida
Zm00001e011846_P001 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 222 297
IPR000504 RRM_dom 451 511
IPR000504 RRM_dom 29 99
No external refs found!