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  5. LOC_Os03g61040.1

LOC_Os03g61040.1


Description : regulator (GIL1) of phytochrome-mediated agravitropism


Gene families : OG0000772 (Archaeplastida) Phylogenetic Tree(s): OG0000772_tree ,
OG_05_0000456 (LandPlants) Phylogenetic Tree(s): OG_05_0000456_tree ,
OG_06_0008032 (SeedPlants) Phylogenetic Tree(s): OG_06_0008032_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g61040.1
Cluster HCCA: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00203020 evm_27.TU.AmTr_v1... Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G60680 No alias Plant protein of unknown function (DUF641) 0.04 Archaeplastida
GSVIVT01024812001 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_22635 No alias regulator (GIL1) of phytochrome-mediated agravitropism 0.02 Archaeplastida
LOC_Os01g10680.1 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_118728g0010 No alias regulator (GIL1) of phytochrome-mediated agravitropism 0.02 Archaeplastida
Solyc02g072140.1.1 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.02 Archaeplastida
Solyc02g083110.1.1 No alias regulator (GIL1) of phytochrome-mediated agravitropism 0.07 Archaeplastida
Solyc07g062310.4.1 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.06 Archaeplastida
Zm00001e004397_P001 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e006224_P001 No alias regulator (GIL1) of phytochrome-mediated agravitropism 0.11 Archaeplastida
Zm00001e012578_P001 No alias Protein GRAVITROPIC IN THE LIGHT 1 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e031256_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Neighborhood
CC GO:0000931 gamma-tubulin large complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
CC GO:0008274 gamma-tubulin ring complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031503 protein-containing complex localization IEP Neighborhood
BP GO:0033566 gamma-tubulin complex localization IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034629 cellular protein-containing complex localization IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044450 microtubule organizing center part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006943 DUF641_pln 115 234
No external refs found!