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  5. LOC_Os03g61260.1

LOC_Os03g61260.1


Description : component psRPL18 of large ribosomal subunit proteome


Gene families : OG0002601 (Archaeplastida) Phylogenetic Tree(s): OG0002601_tree ,
OG_05_0005445 (LandPlants) Phylogenetic Tree(s): OG_05_0005445_tree ,
OG_06_0007992 (SeedPlants) Phylogenetic Tree(s): OG_06_0007992_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g61260.1
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00209880 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.06 Archaeplastida
AT1G48350 No alias Ribosomal L18p/L5e family protein 0.22 Archaeplastida
Cre01.g052100 No alias Protein biosynthesis.organelle translation... 0.16 Archaeplastida
GSVIVT01017720001 No alias Protein biosynthesis.organelle translation... 0.11 Archaeplastida
GSVIVT01023016001 No alias 50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea 0.01 Archaeplastida
Gb_12756 No alias component psRPL18 of large ribosomal subunit proteome 0.12 Archaeplastida
MA_7609850g0010 No alias 50S ribosomal protein L18, chloroplastic OS=Arabidopsis... 0.11 Archaeplastida
Mp6g08500.1 No alias component psRPL18 of large ribosomal subunit proteome 0.22 Archaeplastida
Pp3c11_5070V3.1 No alias Ribosomal L18p/L5e family protein 0.19 Archaeplastida
Pp3c7_24650V3.1 No alias Ribosomal L18p/L5e family protein 0.17 Archaeplastida
Smo143891 No alias Protein biosynthesis.organelle translation... 0.03 Archaeplastida
Solyc05g007910.3.1 No alias component psRPL18 of large ribosomal subunit proteome 0.03 Archaeplastida
Solyc12g098890.2.1 No alias component psRPL18 of large ribosomal subunit proteome 0.24 Archaeplastida
Zm00001e006246_P001 No alias component psRPL18 of large ribosomal subunit proteome 0.3 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004418 hydroxymethylbilane synthase activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005484 Ribosomal_L18 54 170
No external refs found!