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  5. LOC_Os03g63560.1

LOC_Os03g63560.1


Description : OTP70 plastidial RNA splicing factor


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009182 (LandPlants) Phylogenetic Tree(s): OG_05_0009182_tree ,
OG_06_0010965 (SeedPlants) Phylogenetic Tree(s): OG_06_0010965_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g63560.1
Cluster HCCA: Cluster_351

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.01 Archaeplastida
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.01 Archaeplastida
AMTR_s00095p00039180 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g63370,... 0.01 Archaeplastida
AMTR_s00127p00016340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.01 Archaeplastida
AT1G08070 OTP82 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G59720 CRR28 Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
AT5G39350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.1 Archaeplastida
LOC_Os02g46980.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.01 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os03g60200.1 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.01 Archaeplastida
LOC_Os09g07780.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.01 Archaeplastida
Solyc02g069500.1.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
Zm00001e032679_P001 No alias RNA editing factor (OTP80) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 437
IPR002885 Pentatricopeptide_repeat 199 238
IPR002885 Pentatricopeptide_repeat 243 286
IPR002885 Pentatricopeptide_repeat 141 188
No external refs found!