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  5. AMTR_s00004p00165390

AMTR_s00004p00165390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.182

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.YABBY transcription factor


Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0002078 (LandPlants) Phylogenetic Tree(s): OG_05_0002078_tree ,
OG_06_0001123 (SeedPlants) Phylogenetic Tree(s): OG_06_0001123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00165390
Cluster HCCA: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.03 Archaeplastida
GSVIVT01012246001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
GSVIVT01013778001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
Gb_22423 No alias transcription factor (YABBY) 0.02 Archaeplastida
LOC_Os03g11600.1 No alias transcription factor (YABBY) 0.03 Archaeplastida
Solyc01g091010.3.1 No alias transcription factor (YABBY) 0.07 Archaeplastida
Solyc08g079100.3.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
Solyc11g071810.2.1 No alias transcription factor (YABBY) 0.12 Archaeplastida
Zm00001e012387_P001 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e012388_P001 No alias transcription factor (YABBY) 0.04 Archaeplastida
Zm00001e017951_P002 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e032845_P002 No alias transcription factor (YABBY) 0.02 Archaeplastida
Zm00001e041322_P001 No alias transcription factor (YABBY) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006780 YABBY 2 156
No external refs found!