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  5. LOC_Os04g08600.1

LOC_Os04g08600.1


Description : no hits & (original description: none)


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0066352 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g08600.1
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00139230 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
AT5G43540 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
GSVIVT01013168001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01031007001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01037897001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
LOC_Os03g05490.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os05g14130.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os12g42250.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_110160g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc05g009380.4.1 No alias Zinc finger protein JAGGED OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e005916_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e012453_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e017009_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e025746_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034883_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Neighborhood
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009092 homoserine metabolic process IEP Neighborhood
BP GO:0019346 transsulfuration IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0050667 homocysteine metabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!