1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os04g18090.1

LOC_Os04g18090.1


Description : linker histone (H1)


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g18090.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.07 Archaeplastida
AMTR_s00057p00112340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.06 Archaeplastida
AMTR_s00185p00055680 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 Archaeplastida
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.22 Archaeplastida
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.11 Archaeplastida
Cpa|evm.model.tig00020780.71 No alias No description available 0.01 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.33 Archaeplastida
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.09 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.33 Archaeplastida
Gb_03348 No alias linker histone (H1) 0.17 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.13 Archaeplastida
MA_10428525g0020 No alias linker histone (H1) 0.05 Archaeplastida
MA_10436125g0010 No alias linker histone (H1) 0.05 Archaeplastida
MA_10436125g0020 No alias linker histone (H1) 0.06 Archaeplastida
MA_11137g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_11231g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.17 Archaeplastida
MA_5293931g0010 No alias No annotation 0.07 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.14 Archaeplastida
MA_6251451g0010 No alias No annotation 0.07 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.23 Archaeplastida
Pp3c18_14270V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.02 Archaeplastida
Pp3c18_19330V3.1 No alias winged-helix DNA-binding transcription factor family protein 0.08 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.15 Archaeplastida
Solyc09g083380.4.1 No alias linker histone (H1) 0.24 Archaeplastida
Zm00001e006018_P006 No alias linker histone (H1) 0.08 Archaeplastida
Zm00001e007189_P001 No alias linker histone (H1) 0.24 Archaeplastida
Zm00001e011857_P001 No alias linker histone (H1) 0.08 Archaeplastida
Zm00001e011859_P001 No alias linker histone (H1) 0.22 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0042393 histone binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 34 101
No external refs found!