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  5. LOC_Os04g23210.1

LOC_Os04g23210.1


Description : Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana (sp|q8w4p9|tt9_arath : 508.0)


Gene families : OG0003614 (Archaeplastida) Phylogenetic Tree(s): OG0003614_tree ,
OG_05_0003790 (LandPlants) Phylogenetic Tree(s): OG_05_0003790_tree ,
OG_06_0004176 (SeedPlants) Phylogenetic Tree(s): OG_06_0004176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g23210.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Cre12.g515250 No alias Protein TRANSPARENT TESTA 9 OS=Arabidopsis thaliana 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003896 DNA primase activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0019566 arabinose metabolic process IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0046373 L-arabinose metabolic process IEP Neighborhood
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR019155 CLEC16A/TT9_N 122 160
IPR019155 CLEC16A/TT9_N 41 106
No external refs found!