LOC_Os04g23820.1

Description : Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica (sp|q9zts1|sym_orysj : 148.0)

Gene families : OG0001682 (Archaeplastida) Phylogenetic Tree(s): OG0001682_tree ,
OG_05_0007870 (LandPlants) Phylogenetic Tree(s): OG_05_0007870_tree ,
OG_06_0009675 (SeedPlants) Phylogenetic Tree(s): OG_06_0009675_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g23820.1
Cluster	HCCA: Cluster_289

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g046652	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.01	Archaeplastida
Cre08.g364650	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	Archaeplastida
MA_169555g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e040540_P001	No alias	Probable methionine--tRNA ligase OS=Oryza sativa subsp....	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Neighborhood
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Neighborhood
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002547	tRNA-bd_dom	97	191

External Links

No external refs found!