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  5. LOC_Os04g25960.1

LOC_Os04g25960.1


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0001049 (LandPlants) Phylogenetic Tree(s): OG_05_0001049_tree ,
OG_06_0000558 (SeedPlants) Phylogenetic Tree(s): OG_06_0000558_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g25960.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.01 Archaeplastida
GSVIVT01038453001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 Archaeplastida
Gb_09525 No alias cohesin cofactor (PDS5) 0.01 Archaeplastida
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
MA_180523g0010 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.01 Archaeplastida
Solyc03g116970.3.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc06g065710.3.1 No alias cohesin cofactor (PDS5) 0.01 Archaeplastida
Zm00001e007658_P001 No alias cohesin cofactor (PDS5) 0.01 Archaeplastida
Zm00001e041168_P001 No alias cohesin cofactor (PDS5) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR004264 Transposase_23 561 626
No external refs found!