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  5. AMTR_s00004p00270830

AMTR_s00004p00270830 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.302

Description : RNA biosynthesis.transcriptional activation.NF-Y transcription factor complex.NF-YC component


Gene families : OG0000443 (Archaeplastida) Phylogenetic Tree(s): OG0000443_tree ,
OG_05_0000515 (LandPlants) Phylogenetic Tree(s): OG_05_0000515_tree ,
OG_06_0000553 (SeedPlants) Phylogenetic Tree(s): OG_06_0000553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00270830
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g07450.2 No alias component NF-YC of NF-Y transcription factor complex 0.02 Archaeplastida
Solyc01g079870.4.1 No alias component NF-YC of NF-Y transcription factor complex 0.03 Archaeplastida
Solyc06g072040.1.1 No alias component NF-YC of NF-Y transcription factor complex 0.02 Archaeplastida
Zm00001e034481_P001 No alias component NF-YC of NF-Y transcription factor complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005622 intracellular IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
InterPro domains Description Start Stop
IPR003958 CBFA_NFYB_domain 109 172
No external refs found!