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  5. LOC_Os04g31900.1

LOC_Os04g31900.1


Description : transcription factor (CAMTA)


Gene families : OG0000551 (Archaeplastida) Phylogenetic Tree(s): OG0000551_tree ,
OG_05_0000809 (LandPlants) Phylogenetic Tree(s): OG_05_0000809_tree ,
OG_06_0003865 (SeedPlants) Phylogenetic Tree(s): OG_06_0003865_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g31900.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00173360 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 Archaeplastida
AMTR_s00057p00042800 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.CAMTA... 0.02 Archaeplastida
AT1G67310 No alias Calmodulin-binding transcription activator protein with... 0.05 Archaeplastida
AT2G22300 CAMTA3, SR1 signal responsive 1 0.03 Archaeplastida
AT4G16150 No alias calmodulin binding;transcription regulators 0.03 Archaeplastida
AT5G64220 No alias Calmodulin-binding transcription activator protein with... 0.02 Archaeplastida
GSVIVT01004860001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.06 Archaeplastida
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.07 Archaeplastida
GSVIVT01017670001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.09 Archaeplastida
Gb_04014 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Pp3c4_5270V3.1 No alias signal responsive 1 0.02 Archaeplastida
Pp3c8_2690V3.1 No alias Calmodulin-binding transcription activator protein with... 0.03 Archaeplastida
Zm00001e002794_P002 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Zm00001e008367_P002 No alias transcription factor (CAMTA) 0.03 Archaeplastida
Zm00001e012888_P005 No alias transcription factor (CAMTA) 0.06 Archaeplastida
Zm00001e037974_P002 No alias transcription factor (CAMTA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0005244 voltage-gated ion channel activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022832 voltage-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 665 742
IPR002909 IPT_dom 451 532
IPR005559 CG-1_dom 13 126
IPR000048 IQ_motif_EF-hand-BS 884 904
IPR000048 IQ_motif_EF-hand-BS 862 880
No external refs found!