Description : Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana (sp|q9fhr3|pp403_arath : 473.0)
Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os04g33840.1 | |
Cluster | HCCA: Cluster_312 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT3G51320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT5G37570 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.1 | Archaeplastida | |
GSVIVT01029336001 | No alias | Pentatricopeptide repeat-containing protein At1g74630... | 0.02 | Archaeplastida | |
MA_29579g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | Archaeplastida | |
Solyc08g079640.3.1 | No alias | Pentatricopeptide repeat-containing protein At3g51320... | 0.02 | Archaeplastida | |
Solyc11g006940.3.1 | No alias | component Sm-G of U1/U2/U4/U5-associated Sm accessory... | 0.04 | Archaeplastida | |
Solyc11g012570.3.1 | No alias | Pentatricopeptide repeat-containing protein At3g51320... | 0.05 | Archaeplastida | |
Zm00001e008183_P001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.08 | Archaeplastida | |
Zm00001e019067_P001 | No alias | Pentatricopeptide repeat-containing protein At3g21470... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Neighborhood |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Neighborhood |
MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
BP | GO:0006260 | DNA replication | IEP | Neighborhood |
BP | GO:0006265 | DNA topological change | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Neighborhood |
MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
MF | GO:0008483 | transaminase activity | IEP | Neighborhood |
MF | GO:0010181 | FMN binding | IEP | Neighborhood |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043169 | cation binding | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Neighborhood |
BP | GO:0071103 | DNA conformation change | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 365 | 412 |
IPR002885 | Pentatricopeptide_repeat | 341 | 364 |
IPR002885 | Pentatricopeptide_repeat | 235 | 263 |
IPR002885 | Pentatricopeptide_repeat | 203 | 231 |
IPR002885 | Pentatricopeptide_repeat | 266 | 292 |
IPR002885 | Pentatricopeptide_repeat | 172 | 201 |
IPR002885 | Pentatricopeptide_repeat | 440 | 464 |
No external refs found! |