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  5. LOC_Os04g33840.1

LOC_Os04g33840.1


Description : Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana (sp|q9fhr3|pp403_arath : 473.0)


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g33840.1
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
AT3G51320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.1 Archaeplastida
GSVIVT01029336001 No alias Pentatricopeptide repeat-containing protein At1g74630... 0.02 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Solyc08g079640.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.02 Archaeplastida
Solyc11g006940.3.1 No alias component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 Archaeplastida
Solyc11g012570.3.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.05 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 365 412
IPR002885 Pentatricopeptide_repeat 341 364
IPR002885 Pentatricopeptide_repeat 235 263
IPR002885 Pentatricopeptide_repeat 203 231
IPR002885 Pentatricopeptide_repeat 266 292
IPR002885 Pentatricopeptide_repeat 172 201
IPR002885 Pentatricopeptide_repeat 440 464
No external refs found!