LOC_Os04g35260.1

Description : DExH-box ATP-dependent RNA helicase DExH7, chloroplastic OS=Arabidopsis thaliana (sp|f4i9q5|dexh7_arath : 1290.0)

Gene families : OG0000373 (Archaeplastida) Phylogenetic Tree(s): OG0000373_tree ,
OG_05_0005088 (LandPlants) Phylogenetic Tree(s): OG_05_0005088_tree ,
OG_06_0005969 (SeedPlants) Phylogenetic Tree(s): OG_06_0005969_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g35260.1
Cluster	HCCA: Cluster_141

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00115360	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.09	Archaeplastida
AMTR_s00028p00237040	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.09	Archaeplastida
AT1G58060	No alias	RNA helicase family protein	0.08	Archaeplastida
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.08	Archaeplastida
AT2G30800	HVT1, ATVT-1	helicase in vascular tissue and tapetum	0.07	Archaeplastida
Cpa\|evm.model.tig00000786.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cpa\|evm.model.tig00021094.26	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Cre03.g171650	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01011809001	No alias	DExH-box ATP-dependent RNA helicase DExH5, mitochondrial...	0.06	Archaeplastida
GSVIVT01022608001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01023271001	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.03	Archaeplastida
Gb_05411	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	Archaeplastida
Gb_13707	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	Archaeplastida
Gb_33245	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
Gb_40990	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.02	Archaeplastida
MA_10429367g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.03	Archaeplastida
MA_10432575g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.08	Archaeplastida
MA_177779g0010	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
Mp5g09990.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.08	Archaeplastida
Pp3c11_11510V3.1	No alias	helicase in vascular tissue and tapetum	0.04	Archaeplastida
Pp3c11_11920V3.1	No alias	RNA helicase family protein	0.05	Archaeplastida
Pp3c14_12310V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c17_19726V3.1	No alias	RNA helicase family protein	0.02	Archaeplastida
Pp3c26_14400V3.1	No alias	RNA helicase family protein	0.04	Archaeplastida
Pp3c2_32730V3.1	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Archaeplastida
Smo173775	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.04	Archaeplastida
Smo50132	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc01g006970.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g103690.4.1	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.06	Archaeplastida
Solyc07g044930.3.1	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e004608_P001	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e028983_P004	No alias	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004525	ribonuclease III activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006528	asparagine metabolic process	IEP	Neighborhood
BP	GO:0006529	asparagine biosynthetic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016579	protein deubiquitination	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Neighborhood
MF	GO:0017056	structural constituent of nuclear pore	IEP	Neighborhood
MF	GO:0017069	snRNA binding	IEP	Neighborhood
MF	GO:0017070	U6 snRNA binding	IEP	Neighborhood
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Neighborhood
MF	GO:0030623	U5 snRNA binding	IEP	Neighborhood
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0070646	protein modification by small protein removal	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	600	758
IPR007502	Helicase-assoc_dom	1077	1176
IPR011709	DUF1605	1269	1366
IPR001650	Helicase_C	881	1012

External Links

No external refs found!

LOC_Os04g35260.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation