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  5. LOC_Os04g37690.1

LOC_Os04g37690.1


Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree ,
OG_06_0000318 (SeedPlants) Phylogenetic Tree(s): OG_06_0000318_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g37690.1
Cluster HCCA: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00079360 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00157p00080130 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.05 Archaeplastida
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.05 Archaeplastida
AT5G19350 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cre16.g652900 No alias Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01031780001 No alias Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.06 Archaeplastida
Gb_26951 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Smo418663 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.03 Archaeplastida
Solyc01g108500.4.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.1 Archaeplastida
Solyc03g031720.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Solyc07g064510.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.04 Archaeplastida
Zm00001e006878_P004 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e011585_P002 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Zm00001e022780_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 Archaeplastida
Zm00001e040981_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Neighborhood
BP GO:0001932 regulation of protein phosphorylation IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0019220 regulation of phosphate metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0019900 kinase binding IEP Neighborhood
MF GO:0019901 protein kinase binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031399 regulation of protein modification process IEP Neighborhood
BP GO:0032268 regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043549 regulation of kinase activity IEP Neighborhood
BP GO:0045859 regulation of protein kinase activity IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051174 regulation of phosphorus metabolic process IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051338 regulation of transferase activity IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 160 230
IPR000504 RRM_dom 67 133
IPR000504 RRM_dom 261 324
No external refs found!