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  5. LOC_Os04g38930.1

LOC_Os04g38930.1


Description : Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana (sp|o04491|ppr26_arath : 417.0)


Gene families : OG0010041 (Archaeplastida) Phylogenetic Tree(s): OG0010041_tree ,
OG_05_0009710 (LandPlants) Phylogenetic Tree(s): OG_05_0009710_tree ,
OG_06_0008177 (SeedPlants) Phylogenetic Tree(s): OG_06_0008177_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g38930.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT1G09680 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_03162 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e007886_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016615 malate dehydrogenase activity IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 378 427
IPR002885 Pentatricopeptide_repeat 449 497
IPR002885 Pentatricopeptide_repeat 518 567
IPR002885 Pentatricopeptide_repeat 274 322
IPR002885 Pentatricopeptide_repeat 346 376
IPR002885 Pentatricopeptide_repeat 243 271
No external refs found!