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  5. LOC_Os04g38980.1

LOC_Os04g38980.1


Description : Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana (sp|q3e9n1|pp359_arath : 614.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g38980.1
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Gb_00199 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
Gb_21442 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
LOC_Os03g60690.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Pp3c27_5540V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc03g116840.3.1 No alias RNA editing factor (OTP81) 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 484 532
IPR002885 Pentatricopeptide_repeat 586 634
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 177 204
IPR002885 Pentatricopeptide_repeat 384 409
IPR002885 Pentatricopeptide_repeat 660 683
IPR002885 Pentatricopeptide_repeat 355 379
IPR002885 Pentatricopeptide_repeat 149 175
No external refs found!