LOC_Os04g40400.1

Description : mRNA unwinding factor (eIF4B)

Gene families : OG0001866 (Archaeplastida) Phylogenetic Tree(s): OG0001866_tree ,
OG_05_0001421 (LandPlants) Phylogenetic Tree(s): OG_05_0001421_tree ,
OG_06_0001509 (SeedPlants) Phylogenetic Tree(s): OG_06_0001509_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g40400.1
Cluster	HCCA: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00114p00018640	evm_27.TU.AmTr_v1...	Protein biosynthesis.translation initiation.mRNA...	0.02	Archaeplastida
AT3G26400	EIF4B1	eukaryotic translation initiation factor 4B1	0.03	Archaeplastida
MA_10434878g0010	No alias	mRNA unwinding factor (eIF4B)	0.03	Archaeplastida
MA_78009g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Pp3c3_35650V3.1	No alias	eukaryotic translation initiation factor 4B1	0.02	Archaeplastida
Solyc05g013700.4.1	No alias	mRNA unwinding factor (eIF4B)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Neighborhood
CC	GO:0005737	cytoplasm	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0043038	amino acid activation	IEP	Neighborhood
BP	GO:0043039	tRNA aminoacylation	IEP	Neighborhood
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010433	EIF-4B_pln	1	515

External Links

No external refs found!