LOC_Os04g41490.1


Description : subunit 1 of Pol III RNA polymerase


Gene families : OG0000599 (Archaeplastida) Phylogenetic Tree(s): OG0000599_tree ,
OG_05_0006324 (LandPlants) Phylogenetic Tree(s): OG_05_0006324_tree ,
OG_06_0006832 (SeedPlants) Phylogenetic Tree(s): OG_06_0006832_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g41490.1
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00196820 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
AT1G63020 NRPD1A, POL IVA,... nuclear RNA polymerase D1A 0.02 Archaeplastida
AT2G40030 DRD3, ATNRPD1B,... nuclear RNA polymerase D1B 0.04 Archaeplastida
AT4G35800 RNA_POL_II_LSRNA_... RNA polymerase II large subunit 0.03 Archaeplastida
AT5G60040 NRPC1 nuclear RNA polymerase C1 0.06 Archaeplastida
Cpa|evm.model.tig00022075.5 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g165750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.01 Archaeplastida
GSVIVT01013491001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
GSVIVT01025079001 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.06 Archaeplastida
Gb_33197 No alias subunit 1 of Pol II RNA polymerase 0.04 Archaeplastida
MA_10429268g0010 No alias subunit 1 of Pol IV RNA polymerase 0.02 Archaeplastida
MA_10436091g0010 No alias DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis... 0.05 Archaeplastida
MA_5690g0010 No alias subunit 1 of Pol II RNA polymerase 0.03 Archaeplastida
MA_8544g0010 No alias subunit 1 of Pol II RNA polymerase 0.05 Archaeplastida
MA_8720349g0010 No alias subunit 1 of Pol V RNA polymerase 0.03 Archaeplastida
MA_9539211g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp7g16790.1 No alias subunit 1 of Pol III RNA polymerase 0.04 Archaeplastida
Pp3c17_3180V3.1 No alias nuclear RNA polymerase D1A 0.01 Archaeplastida
Pp3c17_4860V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c1_32300V3.1 No alias RNA polymerase II large subunit 0.03 Archaeplastida
Smo110201 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
Smo442419 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 Archaeplastida
Solyc01g096390.4.1 No alias subunit 1 of Pol V RNA polymerase 0.07 Archaeplastida
Solyc11g072730.2.1 No alias subunit 1 of Pol III RNA polymerase 0.09 Archaeplastida
Zm00001e025206_P001 No alias subunit 1 of Pol V RNA polymerase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
CC GO:0000781 chromosome, telomeric region IEP Neighborhood
CC GO:0000784 nuclear chromosome, telomeric region IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071586 CAAX-box protein processing IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 832 1317
IPR007083 RNA_pol_Rpb1_4 722 825
IPR000722 RNA_pol_asu 347 513
IPR007080 RNA_pol_Rpb1_1 22 345
IPR007066 RNA_pol_Rpb1_3 516 694
No external refs found!