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  5. LOC_Os04g42270.2

LOC_Os04g42270.2


Description : component RPL23a of LSU proteome component


Gene families : OG0002506 (Archaeplastida) Phylogenetic Tree(s): OG0002506_tree ,
OG_05_0002661 (LandPlants) Phylogenetic Tree(s): OG_05_0002661_tree ,
OG_06_0002546 (SeedPlants) Phylogenetic Tree(s): OG_06_0002546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g42270.2
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00069970 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
AMTR_s00029p00132520 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
AT2G39460 RPL23A, RPL23AA, ATRPL23A ribosomal protein L23AA 0.3 Archaeplastida
AT3G55280 RPL23AB ribosomal protein L23AB 0.18 Archaeplastida
Cpa|evm.model.tig00000037.39 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
Cre06.g282500 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
GSVIVT01025041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
GSVIVT01025606001 No alias 60S ribosomal protein L23a-1 OS=Arabidopsis thaliana 0.11 Archaeplastida
MA_10430928g0010 No alias component RPL23a of LSU proteome component 0.23 Archaeplastida
MA_10436962g0020 No alias component RPL23a of LSU proteome component 0.03 Archaeplastida
Mp2g00570.1 No alias component RPL23a of LSU proteome component 0.3 Archaeplastida
Pp3c12_19360V3.1 No alias ribosomal protein L23AB 0.18 Archaeplastida
Pp3c13_15920V3.1 No alias ribosomal protein L23AB 0.13 Archaeplastida
Pp3c3_21160V3.1 No alias ribosomal protein L23AB 0.11 Archaeplastida
Pp3c4_8620V3.1 No alias ribosomal protein L23AB 0.21 Archaeplastida
Smo271663 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 Archaeplastida
Solyc09g005720.3.1 No alias component RPL23a of LSU proteome component 0.12 Archaeplastida
Solyc10g084610.3.1 No alias component RPL23a of LSU proteome component 0.04 Archaeplastida
Solyc10g086330.2.1 No alias component RPL23a of LSU proteome component 0.18 Archaeplastida
Zm00001e007662_P001 No alias component RPL23a of LSU proteome component 0.16 Archaeplastida
Zm00001e031062_P001 No alias component RPL23a of LSU proteome component 0.11 Archaeplastida
Zm00001e041164_P001 No alias component RPL23a of LSU proteome component 0.33 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 13 62
IPR013025 Ribosomal_L25/23 72 133
No external refs found!