LOC_Os04g42380.1

Description : component RPS11 of SSU proteome

Gene families : OG0002226 (Archaeplastida) Phylogenetic Tree(s): OG0002226_tree ,
OG_05_0002056 (LandPlants) Phylogenetic Tree(s): OG_05_0002056_tree ,
OG_06_0002184 (SeedPlants) Phylogenetic Tree(s): OG_06_0002184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g42380.1
Cluster	HCCA: Cluster_318

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00158320	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
AMTR_s00046p00028310	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.07	Archaeplastida
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.06	Archaeplastida
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.06	Archaeplastida
Cpa\|evm.model.tig00000551.22	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
Cre12.g514500	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
GSVIVT01012877001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
GSVIVT01035927001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
Gb_14912	No alias	component RPS11 of SSU proteome	0.07	Archaeplastida
LOC_Os08g10608.1	No alias	component RPS11 of SSU proteome	0.06	Archaeplastida
MA_19350g0010	No alias	component RPS11 of SSU proteome	0.03	Archaeplastida
Mp4g23360.1	No alias	component RPS11 of SSU proteome	0.08	Archaeplastida
Mp6g10500.1	No alias	component RPS11 of SSU proteome	0.08	Archaeplastida
Pp3c14_9600V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Archaeplastida
Pp3c1_27980V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	Archaeplastida
Pp3c2_13690V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Archaeplastida
Pp3s116_30V3.1	No alias	Nucleic acid-binding, OB-fold-like protein	0.07	Archaeplastida
Smo268639	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
Solyc06g073790.3.1	No alias	component RPS11 of SSU proteome	0.05	Archaeplastida
Solyc12g042080.2.1	No alias	component RPS11 of SSU proteome	0.04	Archaeplastida
Zm00001e006955_P001	No alias	component RPS11 of SSU proteome	0.04	Archaeplastida
Zm00001e041635_P001	No alias	component RPS11 of SSU proteome	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008649	rRNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0030684	preribosome	IEP	Neighborhood
BP	GO:0031167	rRNA methylation	IEP	Neighborhood
CC	GO:0032040	small-subunit processome	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0070475	rRNA base methylation	IEP	Neighborhood
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

No external refs found!

LOC_Os04g42380.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation