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  5. LOC_Os04g43150.2

LOC_Os04g43150.2


Description : mRNA endoribonuclease (G3BP)


Gene families : OG0000605 (Archaeplastida) Phylogenetic Tree(s): OG0000605_tree ,
OG_05_0018071 (LandPlants) Phylogenetic Tree(s): OG_05_0018071_tree ,
OG_06_0017655 (SeedPlants) Phylogenetic Tree(s): OG_06_0017655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43150.2
Cluster HCCA: Cluster_359

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00254870 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT5G43960 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.04 Archaeplastida
Cpa|evm.model.tig00000829.14 No alias No description available 0.02 Archaeplastida
GSVIVT01003923001 No alias No description available 0.04 Archaeplastida
GSVIVT01027918001 No alias No description available 0.03 Archaeplastida
MA_15773g0010 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Pp3c26_10400V3.1 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.02 Archaeplastida
Pp3c8_6680V3.1 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.03 Archaeplastida
Solyc06g007780.3.1 No alias mRNA endoribonuclease (G3BP) 0.02 Archaeplastida
Solyc06g083300.4.1 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Zm00001e008436_P002 No alias mRNA endoribonuclease (G3BP) 0.07 Archaeplastida
Zm00001e014590_P001 No alias mRNA endoribonuclease (G3BP) 0.04 Archaeplastida
Zm00001e022613_P001 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Zm00001e040697_P001 No alias mRNA endoribonuclease (G3BP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002098 tRNA wobble uridine modification IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006282 regulation of DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0030896 checkpoint clamp complex IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033588 Elongator holoenzyme complex IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0080134 regulation of response to stress IEP Neighborhood
BP GO:0080135 regulation of cellular response to stress IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR002075 NTF2 35 150
IPR000504 RRM_dom 344 412
No external refs found!