LOC_Os04g43910.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0001322 (LandPlants) Phylogenetic Tree(s): OG_05_0001322_tree ,
OG_06_0001040 (SeedPlants) Phylogenetic Tree(s): OG_06_0001040_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g43910.1
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.04	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.03	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.05	Archaeplastida
GSVIVT01011008001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_39786	No alias	transcription factor (ARF)	0.05	Archaeplastida
MA_85955g0020	No alias	transcription factor (ARF)	0.03	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c27_60V3.1	No alias	auxin response factor 2	0.04	Archaeplastida
Pp3c6_21370V3.1	No alias	auxin response factor 2	0.03	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc07g016180.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc07g042260.4.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Solyc08g008380.4.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc08g082630.3.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e013061_P001	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e015164_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e023038_P001	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016567	protein ubiquitination	IEP	Neighborhood
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Neighborhood
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
BP	GO:0032446	protein modification by small protein conjugation	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0051213	dioxygenase activity	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	276	359
IPR003340	B3_DNA-bd	121	222

External Links

No external refs found!

LOC_Os04g43910.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation