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  5. LOC_Os04g44220.1

LOC_Os04g44220.1


Description : Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana (sp|f4iux6|rent2_arath : 150.0)


Gene families : OG0003758 (Archaeplastida) Phylogenetic Tree(s): OG0003758_tree ,
OG_05_0077781 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0066544 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g44220.1
Cluster HCCA: Cluster_151


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007193 Up-fram_suppressor-2 390 452
IPR003890 MIF4G-like_typ-3 85 246
No external refs found!