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  5. LOC_Os04g45330.1

LOC_Os04g45330.1


Description : transcription factor (YABBY)


Gene families : OG0000890 (Archaeplastida) Phylogenetic Tree(s): OG0000890_tree ,
OG_05_0006725 (LandPlants) Phylogenetic Tree(s): OG_05_0006725_tree ,
OG_06_0004255 (SeedPlants) Phylogenetic Tree(s): OG_06_0004255_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g45330.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00029420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
AMTR_s00085p00032940 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.04 Archaeplastida
AT2G45190 AFO, YAB1, FIL Plant-specific transcription factor YABBY family protein 0.08 Archaeplastida
GSVIVT01012246001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 Archaeplastida
GSVIVT01015567001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.04 Archaeplastida
MA_10432332g0010 No alias transcription factor (YABBY) 0.03 Archaeplastida
Solyc01g010240.3.1 No alias transcription factor (YABBY) 0.04 Archaeplastida
Solyc01g091010.3.1 No alias transcription factor (YABBY) 0.06 Archaeplastida
Solyc08g079100.3.1 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e003268_P003 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e007412_P003 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e012577_P001 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e015245_P002 No alias transcription factor (YABBY) 0.06 Archaeplastida
Zm00001e017951_P002 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e032845_P002 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e035310_P003 No alias transcription factor (YABBY) 0.03 Archaeplastida
Zm00001e038717_P002 No alias transcription factor (YABBY) 0.05 Archaeplastida
Zm00001e041322_P001 No alias transcription factor (YABBY) 0.1 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006780 YABBY 27 218
No external refs found!