LOC_Os04g45650.2

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0013078 (LandPlants) Phylogenetic Tree(s): OG_05_0013078_tree ,
OG_06_0017657 (SeedPlants) Phylogenetic Tree(s): OG_06_0017657_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g45650.2
Cluster	HCCA: Cluster_161

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00074220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00025p00250380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT2G45050	GATA2	GATA transcription factor 2	0.03	Archaeplastida
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.03	Archaeplastida
AT3G54810	BME3-ZF, BME3, GATA8	Plant-specific GATA-type zinc finger transcription...	0.02	Archaeplastida
AT4G16141	No alias	GATA type zinc finger transcription factor family protein	0.04	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.02	Archaeplastida
AT5G66320	GATA5	GATA transcription factor 5	0.04	Archaeplastida
Cpa\|evm.model.tig00001094.21	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.01	Archaeplastida
GSVIVT01017011001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.05	Archaeplastida
GSVIVT01018180001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01018951001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01033385001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
Gb_13387	No alias	transcription factor (GATA)	0.02	Archaeplastida
MA_10436047g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
Pp3c20_22630V3.1	No alias	GATA transcription factor 9	0.02	Archaeplastida
Pp3c21_15110V3.1	No alias	GATA transcription factor 19	0.02	Archaeplastida
Smo440037	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Solyc02g085190.2.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc04g015360.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc06g075140.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e005940_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e006272_P001	No alias	transcription factor (GATA)	0.06	Archaeplastida
Zm00001e007391_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.12	Archaeplastida
Zm00001e018438_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e027439_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e028245_P001	No alias	transcription factor (GATA)	0.04	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e039467_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e041332_P001	No alias	transcription factor (GATA)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0007050	cell cycle arrest	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
BP	GO:0051726	regulation of cell cycle	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	291	325

External Links

No external refs found!

LOC_Os04g45650.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation