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  5. LOC_Os04g46740.1

LOC_Os04g46740.1


Description : pectin methylesterase


Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0007936 (SeedPlants) Phylogenetic Tree(s): OG_06_0007936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g46740.1
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00116p00025230 evm_27.TU.AmTr_v1... Probable pectinesterase 8 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G11370 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G47500 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01013832001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Gb_32012 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os05g44600.1 No alias pectin methylesterase 0.04 Archaeplastida
MA_66089g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_6780346g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_87592g0010 No alias pectin methylesterase 0.02 Archaeplastida
Mp1g17560.1 No alias pectin methylesterase 0.02 Archaeplastida
Pp3c12_24000V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c1_6010V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c8_2010V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Smo104861 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 53 343
No external refs found!