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  5. LOC_Os04g46920.1

LOC_Os04g46920.1


Description : no hits & (original description: none)


Gene families : OG0008547 (Archaeplastida) Phylogenetic Tree(s): OG0008547_tree ,
OG_05_0008344 (LandPlants) Phylogenetic Tree(s): OG_05_0008344_tree ,
OG_06_0008553 (SeedPlants) Phylogenetic Tree(s): OG_06_0008553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g46920.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Gb_09533 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c16_20170V3.1 No alias VASCULAR-RELATED NAC-DOMAIN 6 0.08 Archaeplastida
Solyc03g025740.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e007292_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
CC GO:0005761 mitochondrial ribosome IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 149 164
IPR001878 Znf_CCHC 122 137
IPR025836 Zn_knuckle_CX2CX4HX4C 175 190
IPR025836 Zn_knuckle_CX2CX4HX4C 95 111
IPR025836 Zn_knuckle_CX2CX4HX4C 71 86
No external refs found!