LOC_Os04g48510.1

Description : component GRF of GRF-GIF transcriptional complex

Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0000402 (SeedPlants) Phylogenetic Tree(s): OG_06_0000402_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g48510.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00189460	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	Archaeplastida
AMTR_s00065p00092420	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
AMTR_s00069p00196720	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.02	Archaeplastida
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.03	Archaeplastida
AT2G45480	GRF9, AtGRF9	growth-regulating factor 9	0.04	Archaeplastida
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.12	Archaeplastida
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.03	Archaeplastida
AT4G24150	AtGRF8, GRF8	growth-regulating factor 8	0.02	Archaeplastida
AT4G37740	GRF2, AtGRF2	growth-regulating factor 2	0.1	Archaeplastida
GSVIVT01007165001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.01	Archaeplastida
GSVIVT01015095001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	Archaeplastida
GSVIVT01016762001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	Archaeplastida
GSVIVT01019667001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
GSVIVT01019913001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	Archaeplastida
GSVIVT01024326001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
GSVIVT01033800001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.09	Archaeplastida
GSVIVT01038629001	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	Archaeplastida
Gb_05477	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Gb_20443	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Gb_26136	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
LOC_Os04g51190.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
MA_111469g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
MA_137877g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
MA_18836g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_33661g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
MA_88101g0010	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Mp8g16900.1	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Pp3c12_3720V3.1	No alias	growth-regulating factor 2	0.05	Archaeplastida
Smo420739	No alias	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	Archaeplastida
Solyc01g091540.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.08	Archaeplastida
Solyc02g092070.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Solyc03g082430.1.1	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
Solyc04g077510.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc07g041640.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Solyc08g005430.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Solyc09g009200.3.1	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Solyc10g083510.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Solyc12g096070.2.1	No alias	component GRF of GRF-GIF transcriptional complex	0.05	Archaeplastida
Zm00001e011207_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida
Zm00001e012104_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e015436_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.06	Archaeplastida
Zm00001e015561_P002	No alias	component GRF of GRF-GIF transcriptional complex	0.09	Archaeplastida
Zm00001e023769_P003	No alias	component GRF of GRF-GIF transcriptional complex	0.03	Archaeplastida
Zm00001e029851_P005	No alias	component GRF of GRF-GIF transcriptional complex	0.07	Archaeplastida
Zm00001e030774_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e036224_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.04	Archaeplastida
Zm00001e036657_P001	No alias	component GRF of GRF-GIF transcriptional complex	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	74	108
IPR014977	WRC_dom	141	182

External Links

No external refs found!

LOC_Os04g48510.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation