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  5. LOC_Os04g49450.1

LOC_Os04g49450.1


Description : transcription factor (MYB-related)


Gene families : OG0000637 (Archaeplastida) Phylogenetic Tree(s): OG0000637_tree ,
OG_05_0000630 (LandPlants) Phylogenetic Tree(s): OG_05_0000630_tree ,
OG_06_0012336 (SeedPlants) Phylogenetic Tree(s): OG_06_0012336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g49450.1
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
AT5G37260 RVE2, CIR1 Homeodomain-like superfamily protein 0.07 Archaeplastida
Cpa|evm.model.tig00000217.44 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Zm00001e007140_P003 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e013333_P002 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e041379_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 59 102
No external refs found!