Description : Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana (sp|q9shz8|pp168_arath : 520.0)
Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os04g49520.1 | |
Cluster | HCCA: Cluster_43 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00001p00138570 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | Archaeplastida | |
AMTR_s00057p00137550 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g36980,... | 0.03 | Archaeplastida | |
AMTR_s00095p00039180 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g63370,... | 0.03 | Archaeplastida | |
AMTR_s00099p00097640 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g39530... | 0.02 | Archaeplastida | |
AMTR_s00103p00113040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g65570... | 0.03 | Archaeplastida | |
AMTR_s00127p00016340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g32430,... | 0.02 | Archaeplastida | |
AT2G33680 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT3G20730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Archaeplastida | |
AT3G47840 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
AT4G01030 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Archaeplastida | |
AT4G25270 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01009496001 | No alias | Pentatricopeptide repeat-containing protein At2g04860... | 0.02 | Archaeplastida | |
GSVIVT01027001001 | No alias | Protein modification.phosphorylation.TKL kinase... | 0.03 | Archaeplastida | |
Gb_08890 | No alias | Pentatricopeptide repeat-containing protein At2g03880,... | 0.02 | Archaeplastida | |
Gb_24633 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.02 | Archaeplastida | |
MA_703619g0010 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
MA_71104g0010 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.02 | Archaeplastida | |
MA_7907g0020 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Archaeplastida | |
Zm00001e007133_P001 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000272 | polysaccharide catabolic process | IEP | Neighborhood |
MF | GO:0004497 | monooxygenase activity | IEP | Neighborhood |
MF | GO:0004499 | N,N-dimethylaniline monooxygenase activity | IEP | Neighborhood |
MF | GO:0005516 | calmodulin binding | IEP | Neighborhood |
CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006766 | vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Neighborhood |
BP | GO:0006771 | riboflavin metabolic process | IEP | Neighborhood |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Neighborhood |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Neighborhood |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Neighborhood |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Neighborhood |
BP | GO:0010468 | regulation of gene expression | IEP | Neighborhood |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Neighborhood |
MF | GO:0016160 | amylase activity | IEP | Neighborhood |
MF | GO:0016161 | beta-amylase activity | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0019222 | regulation of metabolic process | IEP | Neighborhood |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Neighborhood |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Neighborhood |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Neighborhood |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Neighborhood |
MF | GO:0050661 | NADP binding | IEP | Neighborhood |
BP | GO:0050789 | regulation of biological process | IEP | Neighborhood |
BP | GO:0050794 | regulation of cellular process | IEP | Neighborhood |
BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Neighborhood |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Neighborhood |
BP | GO:0065007 | biological regulation | IEP | Neighborhood |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Neighborhood |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 104 | 132 |
IPR002885 | Pentatricopeptide_repeat | 438 | 465 |
IPR002885 | Pentatricopeptide_repeat | 309 | 335 |
IPR002885 | Pentatricopeptide_repeat | 337 | 363 |
IPR002885 | Pentatricopeptide_repeat | 643 | 668 |
IPR002885 | Pentatricopeptide_repeat | 543 | 565 |
IPR002885 | Pentatricopeptide_repeat | 409 | 437 |
IPR002885 | Pentatricopeptide_repeat | 234 | 282 |
IPR002885 | Pentatricopeptide_repeat | 467 | 515 |
IPR002885 | Pentatricopeptide_repeat | 568 | 616 |
IPR002885 | Pentatricopeptide_repeat | 68 | 97 |
IPR032867 | DYW_dom | 742 | 855 |
No external refs found! |