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  5. LOC_Os04g50100.1

LOC_Os04g50100.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0001298 (SeedPlants) Phylogenetic Tree(s): OG_06_0001298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g50100.1
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT1G74410 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G27940 No alias RING/U-box superfamily protein 0.01 Archaeplastida
AT2G37580 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G57750 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00020934.54 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_04301 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_20666 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.01 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os03g22110.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g34470.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os07g48680.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_2679g0010 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_462422g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_63503g0010 No alias no hits & (original description: none) 0.01 Archaeplastida
MA_754688g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_8693914g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_92848g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Smo172324 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Solyc06g007230.2.1 No alias RING-H2-class E3 ligase 0.01 Archaeplastida
Solyc11g005290.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g073170.1.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Solyc12g087840.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e003426_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.01 Archaeplastida
Zm00001e009142_P001 No alias no hits & (original description: none) 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 156 199
No external refs found!