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  5. LOC_Os04g50720.1

LOC_Os04g50720.1


Description : E3 ubiquitin ligase (ARA54)


Gene families : OG0002913 (Archaeplastida) Phylogenetic Tree(s): OG0002913_tree ,
OG_05_0002645 (LandPlants) Phylogenetic Tree(s): OG_05_0002645_tree ,
OG_06_0007919 (SeedPlants) Phylogenetic Tree(s): OG_06_0007919_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g50720.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
AT1G32340 NHL8 NDR1/HIN1-like 8 0.04 Archaeplastida
Pp3c6_18080V3.1 No alias NDR1/HIN1-like 8 0.02 Archaeplastida
Smo141959 No alias Probable E3 ubiquitin-protein ligase ARI10... 0.02 Archaeplastida
Zm00001e007087_P001 No alias E3 ubiquitin ligase (ARA54) 0.02 Archaeplastida
Zm00001e015506_P002 No alias E3 ubiquitin ligase (ARA54) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006000 fructose metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006575 RWD-domain 132 265
IPR002867 IBR_dom 394 452
IPR002867 IBR_dom 482 528
No external refs found!