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  5. LOC_Os04g50990.1

LOC_Os04g50990.1


Description : component RPL12 of LSU proteome component


Gene families : OG0002167 (Archaeplastida) Phylogenetic Tree(s): OG0002167_tree ,
OG_05_0002069 (LandPlants) Phylogenetic Tree(s): OG_05_0002069_tree ,
OG_06_0002451 (SeedPlants) Phylogenetic Tree(s): OG_06_0002451_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g50990.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00048810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
AMTR_s00148p00026900 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 Archaeplastida
AT2G37190 No alias Ribosomal protein L11 family protein 0.51 Archaeplastida
AT3G53430 No alias Ribosomal protein L11 family protein 0.18 Archaeplastida
AT5G60670 No alias Ribosomal protein L11 family protein 0.31 Archaeplastida
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 Archaeplastida
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.33 Archaeplastida
GSVIVT01016274001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
GSVIVT01025189001 No alias No description available 0.28 Archaeplastida
GSVIVT01025683001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
MA_10427147g0010 No alias component RPL12 of LSU proteome component 0.38 Archaeplastida
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.48 Archaeplastida
Pp3c15_14410V3.1 No alias Ribosomal protein L11 family protein 0.4 Archaeplastida
Pp3c16_2860V3.1 No alias Ribosomal protein L11 family protein 0.3 Archaeplastida
Pp3c27_660V3.1 No alias Ribosomal protein L11 family protein 0.34 Archaeplastida
Pp3c6_19290V3.1 No alias Ribosomal protein L11 family protein 0.24 Archaeplastida
Pp3c9_15380V3.1 No alias Ribosomal protein L11 family protein 0.35 Archaeplastida
Smo227409 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Solyc06g075180.1.1 No alias component RPL12 of LSU proteome component 0.19 Archaeplastida
Solyc11g065670.1.1 No alias component RPL12 of LSU proteome component 0.34 Archaeplastida
Solyc11g069440.1.1 No alias component RPL12 of LSU proteome component 0.43 Archaeplastida
Zm00001e007067_P001 No alias component RPL12 of LSU proteome component 0.16 Archaeplastida
Zm00001e008316_P001 No alias component RPL12 of LSU proteome component 0.14 Archaeplastida
Zm00001e023297_P001 No alias component RPL12 of LSU proteome component 0.21 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 13 70
IPR020783 Ribosomal_L11_C 75 144
No external refs found!