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  5. AMTR_s00005p00255540

AMTR_s00005p00255540 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00005.174

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000051 (Archaeplastida) Phylogenetic Tree(s): OG0000051_tree ,
OG_05_0000668 (LandPlants) Phylogenetic Tree(s): OG_05_0000668_tree ,
OG_06_0000736 (SeedPlants) Phylogenetic Tree(s): OG_06_0000736_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00005p00255540
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01007389001 No alias External stimuli response.light.UV-A/blue... 0.03 Archaeplastida
Gb_20300 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida
Zm00001e030754_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e034446_P001 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 34 57
No external refs found!