LOC_Os04g54510.1

Description : transcription factor (mTERF)

Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0000021 (SeedPlants) Phylogenetic Tree(s): OG_06_0000021_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54510.1
Cluster	HCCA: Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00225250	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00225430	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00236280	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
AMTR_s00010p00236880	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	Archaeplastida
AMTR_s00010p00255890	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	Archaeplastida
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.07	Archaeplastida
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.04	Archaeplastida
Gb_06120	No alias	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	Archaeplastida
Gb_15878	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Gb_26175	No alias	transcription factor (mTERF)	0.04	Archaeplastida
LOC_Os02g51450.2	No alias	transcription factor (mTERF)	0.04	Archaeplastida
MA_10426325g0010	No alias	transcription factor (mTERF)	0.06	Archaeplastida
MA_192398g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
MA_493420g0010	No alias	transcription factor (mTERF)	0.06	Archaeplastida
MA_7539255g0010	No alias	no hits & (original description: none)	0.06	Archaeplastida
MA_81581g0010	No alias	transcription factor (mTERF)	0.02	Archaeplastida
MA_92135g0010	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Smo77318	No alias	RNA biosynthesis.organelle...	0.02	Archaeplastida
Solyc02g067960.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc02g082010.3.1	No alias	transcription factor (mTERF)	0.02	Archaeplastida
Solyc04g011700.2.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Solyc04g051880.3.1	No alias	transcription factor (mTERF)	0.04	Archaeplastida
Solyc04g072500.1.1	No alias	transcription factor (mTERF)	0.06	Archaeplastida
Solyc04g072540.3.1	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e010589_P001	No alias	transcription factor (mTERF)	0.06	Archaeplastida
Zm00001e018894_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida
Zm00001e022322_P001	No alias	transcription factor (mTERF)	0.05	Archaeplastida
Zm00001e027097_P001	No alias	transcription factor (mTERF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
CC	GO:0016592	mediator complex	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044451	nucleoplasm part	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003690	MTERF	88	216
IPR003690	MTERF	267	362

External Links

No external refs found!

LOC_Os04g54510.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation