LOC_Os04g56320.1

Description : Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata (sp|q7x999|rca2_lartr : 249.0)

Gene families : OG0001377 (Archaeplastida) Phylogenetic Tree(s): OG0001377_tree ,
OG_05_0006554 (LandPlants) Phylogenetic Tree(s): OG_05_0006554_tree ,
OG_06_0006946 (SeedPlants) Phylogenetic Tree(s): OG_06_0006946_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g56320.1
Cluster	HCCA: Cluster_256

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00255830	evm_27.TU.AmTr_v1...	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.05	Archaeplastida
AT2G39730	RCA	rubisco activase	0.07	Archaeplastida
Cpa\|evm.model.tig00020848.91	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	Archaeplastida
Cre04.g229300	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.02	Archaeplastida
GSVIVT01016062001	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.09	Archaeplastida
GSVIVT01024910001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.1	Archaeplastida
GSVIVT01034123001	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.1	Archaeplastida
Gb_04109	No alias	ATP-dependent activase involved in RuBisCo regulation	0.03	Archaeplastida
Gb_29248	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.04	Archaeplastida
Gb_37968	No alias	ATP-dependent activase involved in RuBisCo regulation	0.07	Archaeplastida
MA_10428784g0010	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.07	Archaeplastida
MA_10433855g0010	No alias	ATP-dependent activase involved in RuBisCo regulation	0.06	Archaeplastida
MA_379291g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp2g04090.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.04	Archaeplastida
Mp3g03990.1	No alias	ATP-dependent activase involved in RuBisCo regulation	0.06	Archaeplastida
Pp3c15_12410V3.1	No alias	rubisco activase	0.07	Archaeplastida
Pp3c22_12960V3.1	No alias	rubisco activase	0.08	Archaeplastida
Pp3c4_22100V3.1	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.07	Archaeplastida
Pp3c9_5280V3.1	No alias	rubisco activase	0.01	Archaeplastida
Pp3c9_5310V3.1	No alias	rubisco activase	0.07	Archaeplastida
Smo268623	No alias	Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat...	0.07	Archaeplastida
Smo82367	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.08	Archaeplastida
Solyc03g117850.4.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.07	Archaeplastida
Solyc10g086580.2.1	No alias	ATP-dependent activase involved in RuBisCo regulation	0.08	Archaeplastida
Solyc11g027920.2.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.04	Archaeplastida
Zm00001e020928_P001	No alias	ATP-dependent activase involved in RuBisCo regulation	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	Neighborhood
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Neighborhood
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005779	integral component of peroxisomal membrane	IEP	Neighborhood
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Neighborhood
BP	GO:0006353	DNA-templated transcription, termination	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006520	cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0006536	glutamate metabolic process	IEP	Neighborhood
BP	GO:0006537	glutamate biosynthetic process	IEP	Neighborhood
BP	GO:0006541	glutamine metabolic process	IEP	Neighborhood
BP	GO:0006542	glutamine biosynthetic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0008150	biological_process	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	Neighborhood
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009116	nucleoside metabolic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009119	ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
CC	GO:0009507	chloroplast	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009536	plastid	IEP	Neighborhood
MF	GO:0015930	glutamate synthase activity	IEP	Neighborhood
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016211	ammonia ligase activity	IEP	Neighborhood
MF	GO:0016462	pyrophosphatase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
BP	GO:0016559	peroxisome fission	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Neighborhood
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Neighborhood
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	Neighborhood
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Neighborhood
BP	GO:0018130	heterocycle biosynthetic process	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
CC	GO:0031231	intrinsic component of peroxisomal membrane	IEP	Neighborhood
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Neighborhood
CC	GO:0031301	integral component of organelle membrane	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042278	purine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
CC	GO:0044438	microbody part	IEP	Neighborhood
CC	GO:0044439	peroxisomal part	IEP	Neighborhood
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	Neighborhood
BP	GO:0048285	organelle fission	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
MF	GO:0098809	nitrite reductase activity	IEP	Neighborhood
BP	GO:1901068	guanosine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
BP	GO:1901657	glycosyl compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	2	124

External Links

No external refs found!

LOC_Os04g56320.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation