LOC_Os04g56850.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g56850.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00198750	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00092p00072950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00148p00046020	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00211p00025860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
AT1G59750	ARF1	auxin response factor 1	0.03	Archaeplastida
AT1G77850	ARF17	auxin response factor 17	0.03	Archaeplastida
AT2G33860	ARF3, ETT	Transcriptional factor B3 family protein /...	0.11	Archaeplastida
AT4G23980	ARF9	auxin response factor 9	0.03	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.05	Archaeplastida
GSVIVT01008950001	No alias	Auxin response factor 17 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.05	Archaeplastida
GSVIVT01025159001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01025198001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.01	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Gb_23186	No alias	transcription factor (ARF)	0.04	Archaeplastida
Gb_32864	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os06g46410.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.03	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c6_21370V3.1	No alias	auxin response factor 2	0.02	Archaeplastida
Smo181406	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Solyc01g096070.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc04g081240.2.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc08g008380.4.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e004554_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e006640_P002	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e012670_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e015164_P002	No alias	transcription factor (ARF)	0.01	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004180	carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009605	response to external stimulus	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032200	telomere organization	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0042592	homeostatic process	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0051276	chromosome organization	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
BP	GO:0060249	anatomical structure homeostasis	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
MF	GO:0070008	serine-type exopeptidase activity	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	269	351
IPR003340	B3_DNA-bd	143	244
IPR033389	AUX/IAA_dom	808	939

External Links

No external refs found!

LOC_Os04g56850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation