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  5. AMTR_s00005p00265140

AMTR_s00005p00265140 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00005.222

No description available


Gene families : OG0001805 (Archaeplastida) Phylogenetic Tree(s): OG0001805_tree ,
OG_05_0002175 (LandPlants) Phylogenetic Tree(s): OG_05_0002175_tree ,
OG_06_0002146 (SeedPlants) Phylogenetic Tree(s): OG_06_0002146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00005p00265140
Cluster HCCA: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g03400.1 No alias Putative E3 ubiquitin-protein ligase SINA-like 6... 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0007275 multicellular organism development IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004556 alpha-amylase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006450 regulation of translational fidelity IEP Neighborhood
BP GO:0007264 small GTPase mediated signal transduction IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
MF GO:0016151 nickel cation binding IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 4 133
No external refs found!