LOC_Os04g59620.1

Description : chromatin remodeling factor (ERCC6)

Gene families : OG0004952 (Archaeplastida) Phylogenetic Tree(s): OG0004952_tree ,
OG_05_0005405 (LandPlants) Phylogenetic Tree(s): OG_05_0005405_tree ,
OG_06_0005202 (SeedPlants) Phylogenetic Tree(s): OG_06_0005202_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g59620.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Pp3c14_20620V3.1	No alias	chromatin remodeling 24	0.02	Archaeplastida
Pp3c2_11030V3.1	No alias	chromatin remodeling 24	0.02	Archaeplastida
Solyc01g068280.3.1	No alias	chromatin remodeling factor (ERCC6)	0.02	Archaeplastida
Zm00001e007521_P001	No alias	chromatin remodeling factor (ERCC6)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Neighborhood
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006298	mismatch repair	IEP	Neighborhood
BP	GO:0006338	chromatin remodeling	IEP	Neighborhood
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0010215	cellulose microfibril organization	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0030198	extracellular matrix organization	IEP	Neighborhood
MF	GO:0030983	mismatched DNA binding	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
MF	GO:0031491	nucleosome binding	IEP	Neighborhood
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Neighborhood
BP	GO:0043062	extracellular structure organization	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:1990380	Lys48-specific deubiquitinase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	237	349
IPR000330	SNF2_N	21	151

External Links

No external refs found!

LOC_Os04g59620.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation