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  5. LOC_Os05g01480.1

LOC_Os05g01480.1


Description : A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g01480.1
Cluster HCCA: Cluster_307

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00026380 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
AMTR_s00021p00189630 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
AT1G01200 RABA3, ATRAB-A3, ATRABA3 RAB GTPase homolog A3 0.03 Archaeplastida
AT1G09630 ATRABA2A,... RAB GTPase 11C 0.04 Archaeplastida
AT1G16920 ATRABA1B, RAB11, RABA1b RAB GTPase homolog A1B 0.04 Archaeplastida
AT1G28550 RABA1i, AtRABA1i RAB GTPase homolog A1I 0.02 Archaeplastida
AT1G73640 RABA6a, AtRABA6a RAB GTPase homolog A6A 0.04 Archaeplastida
AT2G33870 ArRABA1h RAB GTPase homolog A1H 0.03 Archaeplastida
AT4G39990 ATRABA4B, ATGB3,... RAB GTPase homolog A4B 0.03 Archaeplastida
AT5G65270 AtRABA4a, RABA4a RAB GTPase homolog A4A 0.03 Archaeplastida
Cpa|evm.model.tig00020961.97 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Cre03.g189250 No alias Vesicle trafficking.regulation of membrane tethering and... 0.1 Archaeplastida
GSVIVT01020651001 No alias Ras-related protein RABA1e OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01021253001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Gb_03447 No alias A-class RAB GTPase 0.02 Archaeplastida
Gb_12544 No alias A-class RAB GTPase 0.05 Archaeplastida
Gb_18286 No alias A-class RAB GTPase 0.03 Archaeplastida
Gb_37703 No alias A-class RAB GTPase 0.05 Archaeplastida
MA_10428137g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_109703g0010 No alias A-class RAB GTPase 0.02 Archaeplastida
MA_177507g0010 No alias Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii... 0.02 Archaeplastida
MA_59492g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_93200g0020 No alias Ras-related protein RABA4d OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c14_15250V3.1 No alias RAB GTPase homolog A2B 0.03 Archaeplastida
Pp3c2_10280V3.1 No alias RAB GTPase homolog A2B 0.02 Archaeplastida
Smo146310 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Solyc02g072180.3.1 No alias A-class RAB GTPase 0.04 Archaeplastida
Solyc03g118820.4.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Solyc04g012180.4.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Solyc07g053480.4.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Solyc10g045550.2.1 No alias A-class RAB GTPase 0.09 Archaeplastida
Zm00001e000673_P001 No alias A-class RAB GTPase 0.05 Archaeplastida
Zm00001e006210_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e009700_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e012878_P002 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e020213_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e027669_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e028750_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e030680_P001 No alias A-class RAB GTPase 0.06 Archaeplastida
Zm00001e032148_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e033825_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e037250_P001 No alias A-class RAB GTPase 0.05 Archaeplastida
Zm00001e038828_P001 No alias A-class RAB GTPase 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 16 175
No external refs found!