1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00005p00268890

AMTR_s00005p00268890 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00005.249

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00005p00268890
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT2G36890 ATMYB38, MYB38,... Duplicated homeodomain-like superfamily protein 0.02 Archaeplastida
AT5G57620 MYB36, AtMYB36 myb domain protein 36 0.04 Archaeplastida
Cre07.g345350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01027182001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01029904001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Gb_02422 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10426901g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_129382g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_134436g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_14452g0010 No alias transcription factor (MYB) 0.06 Archaeplastida
MA_14730g0020 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_362115g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_45091g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_7032764g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_80033g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_8147g0020 No alias transcription factor (MYB) 0.04 Archaeplastida
MA_9818613g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c12_10360V3.1 No alias myb domain protein 105 0.02 Archaeplastida
Zm00001e012960_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e025724_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e026426_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e040265_P001 No alias transcription factor (MYB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 13 60
IPR001005 SANT/Myb 66 111
No external refs found!