LOC_Os05g03884.1

Description : transcription factor (KNOX)

Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g03884.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00169620	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
AMTR_s00085p00165180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.08	Archaeplastida
AT1G70510	KNAT2, ATK1	KNOTTED-like from Arabidopsis thaliana 2	0.07	Archaeplastida
AT4G08150	BP, BP1, KNAT1	KNOTTED-like from Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01004811001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01007715001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.08	Archaeplastida
GSVIVT01009273001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01013790001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	Archaeplastida
GSVIVT01030488001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
GSVIVT01031241001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.06	Archaeplastida
GSVIVT01038787001	No alias	No description available	0.02	Archaeplastida
Gb_00572	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Gb_00573	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Gb_10887	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Gb_14469	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Gb_14470	No alias	transcription factor (KNOX)	0.04	Archaeplastida
LOC_Os03g56140.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
MA_114226g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Mp5g01600.1	No alias	transcription factor (KNOX)	0.02	Archaeplastida
Pp3c19_5610V3.1	No alias	No annotation	0.02	Archaeplastida
Pp3c21_10320V3.1	No alias	KNOTTED-like from Arabidopsis thaliana 2	0.03	Archaeplastida
Pp3c6_1550V3.1	No alias	KNOTTED1-like homeobox gene 3	0.04	Archaeplastida
Smo159366	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Solyc01g100510.4.1	No alias	transcription factor (KNOX)	0.04	Archaeplastida
Solyc02g081120.4.1	No alias	transcription factor (KNOX)	0.09	Archaeplastida
Solyc04g077210.3.1	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Solyc05g005090.4.1	No alias	transcription factor (KNOX)	0.05	Archaeplastida
Zm00001e005545_P001	No alias	transcription factor (KNOX)	0.06	Archaeplastida
Zm00001e005547_P001	No alias	transcription factor (KNOX)	0.03	Archaeplastida
Zm00001e011538_P001	No alias	transcription factor (KNOX)	0.1	Archaeplastida
Zm00001e017489_P001	No alias	transcription factor (KNOX)	0.09	Archaeplastida
Zm00001e027562_P001	No alias	transcription factor (KNOX)	0.09	Archaeplastida
Zm00001e029453_P001	No alias	transcription factor (KNOX)	0.06	Archaeplastida
Zm00001e032761_P001	No alias	transcription factor (KNOX)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008283	cell proliferation	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	197	218
IPR008422	Homeobox_KN_domain	237	276
IPR005541	KNOX2	108	154
IPR005540	KNOX1	55	94

External Links

No external refs found!

LOC_Os05g03884.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation