1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g04740.2

LOC_Os05g04740.2


Description : transcription factor (bHLH)


Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0083053 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0071983 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g04740.2
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 Archaeplastida
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT5G43175 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G61270 PIF7 phytochrome-interacting factor7 0.05 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
LOC_Os09g28210.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.04 Archaeplastida
Mp6g21470.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Pp3c27_8050V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c3_8460V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.02 Archaeplastida
Pp3c4_4040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 Archaeplastida
Smo409950 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 Archaeplastida
Smo418491 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 Archaeplastida
Solyc01g102300.3.1 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc10g049780.1.1 No alias transcription factor (bHLH) 0.05 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.03 Archaeplastida
Zm00001e020477_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e021129_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
InterPro domains Description Start Stop
IPR011598 bHLH_dom 375 415
No external refs found!