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  5. LOC_Os05g04850.1

LOC_Os05g04850.1


Description : component Y14 of RNA quality control Exon Junction complex


Gene families : OG0004338 (Archaeplastida) Phylogenetic Tree(s): OG0004338_tree ,
OG_05_0005250 (LandPlants) Phylogenetic Tree(s): OG_05_0005250_tree ,
OG_06_0007557 (SeedPlants) Phylogenetic Tree(s): OG_06_0007557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g04850.1
Cluster HCCA: Cluster_215

Target Alias Description ECC score Gene Family Method Actions
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Archaeplastida
Cpa|evm.model.tig00021351.15 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Cpa|evm.model.tig00021352.5 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 Archaeplastida
Cre12.g526750 No alias RNA processing.RNA quality control Exon Junction complex... 0.06 Archaeplastida
GSVIVT01026504001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Mp5g04230.1 No alias component Y14 of RNA quality control Exon Junction complex 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 103 168
No external refs found!