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  5. LOC_Os05g06150.1

LOC_Os05g06150.1


Description : Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana (sp|q9caa8|pp108_arath : 323.0)


Gene families : OG0021452 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0021261 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020505 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g06150.1
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
Zm00001e003088_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 234
IPR002885 Pentatricopeptide_repeat 263 284
IPR002885 Pentatricopeptide_repeat 85 115
IPR002885 Pentatricopeptide_repeat 291 321
IPR002885 Pentatricopeptide_repeat 364 388
IPR002885 Pentatricopeptide_repeat 326 351
No external refs found!