Description : Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana (sp|q9mag8|ppr79_arath : 232.0)
Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os05g11700.1 | |
Cluster | HCCA: Cluster_257 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00024p00204830 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g39710... | 0.04 | Archaeplastida | |
AMTR_s00029p00104100 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g61870,... | 0.02 | Archaeplastida | |
AMTR_s00029p00214000 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g09060... | 0.04 | Archaeplastida | |
AT1G07740 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Archaeplastida | |
AT1G53330 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT2G06000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Archaeplastida | |
AT4G01400 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.04 | Archaeplastida | |
AT5G18475 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT5G46100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT5G64320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01008016001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
GSVIVT01011280001 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.04 | Archaeplastida | |
GSVIVT01024665001 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.02 | Archaeplastida | |
GSVIVT01031218001 | No alias | Pentatricopeptide repeat-containing protein At5g16420,... | 0.02 | Archaeplastida | |
Gb_06545 | No alias | Pentatricopeptide repeat-containing protein At2g06000... | 0.03 | Archaeplastida | |
Gb_06893 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Gb_07822 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.02 | Archaeplastida | |
Gb_12002 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.02 | Archaeplastida | |
Gb_14900 | No alias | Pentatricopeptide repeat-containing protein At4g20090... | 0.02 | Archaeplastida | |
Gb_23263 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.03 | Archaeplastida | |
Gb_37573 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.02 | Archaeplastida | |
LOC_Os05g04160.1 | No alias | Pentatricopeptide repeat-containing protein At3g48810... | 0.01 | Archaeplastida | |
LOC_Os08g39050.1 | No alias | Pentatricopeptide repeat-containing protein At1g80150,... | 0.01 | Archaeplastida | |
MA_125741g0010 | No alias | Pentatricopeptide repeat-containing protein At5g16420,... | 0.02 | Archaeplastida | |
MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.03 | Archaeplastida | |
MA_137206g0010 | No alias | PPR-type mitochondrial ribosome regulatory protein (PPR336) | 0.04 | Archaeplastida | |
MA_17644g0010 | No alias | Pentatricopeptide repeat-containing protein At2g17525,... | 0.02 | Archaeplastida | |
MA_525159g0010 | No alias | Pentatricopeptide repeat-containing protein At1g07740,... | 0.01 | Archaeplastida | |
MA_71816g0020 | No alias | Pentatricopeptide repeat-containing protein At3g14580,... | 0.02 | Archaeplastida | |
MA_742945g0010 | No alias | Pentatricopeptide repeat-containing protein At5g16420,... | 0.02 | Archaeplastida | |
MA_80720g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
Smo78295 | No alias | No description available | 0.02 | Archaeplastida | |
Solyc02g077650.2.1 | No alias | Pentatricopeptide repeat-containing protein At5g46100... | 0.02 | Archaeplastida | |
Solyc05g012250.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g80150,... | 0.02 | Archaeplastida | |
Solyc09g014210.3.1 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.02 | Archaeplastida | |
Solyc09g061760.1.1 | No alias | Pentatricopeptide repeat-containing protein At2g17525,... | 0.01 | Archaeplastida | |
Solyc11g068470.3.1 | No alias | group-II intron mitochondrial splicing factor (MISF74) | 0.02 | Archaeplastida | |
Solyc12g014330.1.1 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Archaeplastida | |
Zm00001e003447_P001 | No alias | no hits & (original description: none) | 0.04 | Archaeplastida | |
Zm00001e011589_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Zm00001e028732_P001 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.02 | Archaeplastida | |
Zm00001e028938_P001 | No alias | Pentatricopeptide repeat-containing protein At1g55890,... | 0.07 | Archaeplastida | |
Zm00001e030818_P001 | No alias | Pentatricopeptide repeat-containing protein At5g18475... | 0.05 | Archaeplastida | |
Zm00001e034625_P001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003724 | RNA helicase activity | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
CC | GO:0005694 | chromosome | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0006382 | adenosine to inosine editing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0008608 | attachment of spindle microtubules to kinetochore | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
BP | GO:0016553 | base conversion or substitution editing | IEP | Neighborhood |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
CC | GO:0031262 | Ndc80 complex | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No external refs found! |