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  5. AMTR_s00006p00196300

AMTR_s00006p00196300 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.83

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.ITS1 rRNA removal.SLX9 pre-rRNA cleavage factor


Gene families : OG0007973 (Archaeplastida) Phylogenetic Tree(s): OG0007973_tree ,
OG_05_0008836 (LandPlants) Phylogenetic Tree(s): OG_05_0008836_tree ,
OG_06_0008478 (SeedPlants) Phylogenetic Tree(s): OG_06_0008478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00196300
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT2G01640 No alias unknown protein; Has 51 Blast hits to 51 proteins in 21... 0.02 Archaeplastida
Pp3c21_2370V3.1 No alias No annotation 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005674 transcription factor TFIIF complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!