LOC_Os05g18950.1


Description : Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana (sp|q9sy75|ppr30_arath : 339.0)


Gene families : OG0010995 (Archaeplastida) Phylogenetic Tree(s): OG0010995_tree ,
OG_05_0010952 (LandPlants) Phylogenetic Tree(s): OG_05_0010952_tree ,
OG_06_0011507 (SeedPlants) Phylogenetic Tree(s): OG_06_0011507_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g18950.1
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030455001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo123482 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 355
IPR002885 Pentatricopeptide_repeat 204 227
IPR002885 Pentatricopeptide_repeat 174 202
IPR002885 Pentatricopeptide_repeat 380 405
No external refs found!